Math, programming and visualization tools
Here you can find a collection of tools that we work with on a daily basis and strongly recommend. This selection contains our favorite tools that make our lives as scientists much easier. Enjoy!
Math and Programming
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"Boost Graph Library is a generic graph library for C++." |
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"Gephi is visualization tool for analyzing all kinds of networks and complex systems." |
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"Igrapgh is a graph library that is useful for graph/network analysis. This library can be used in several languages such as C, Python and R." |
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"Mapequation is a tool that simplifies and highlights important structures in complex networks or reveals structural changes with our own tools." |
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"Mathematica is a computational software program intended for mathematical and other applications." |
| "Matplotlib is a python 2D plotting library which produces publication quality figures in a variety of hardcopy formats and interactive environments across platforms." | |
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"Maxima is a system for the manipulation of symbolic and numerical expressions." |
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"MySQL is an open-source relational database management system." |
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"NetLogo is a multi-agent programmable modeling environment." |
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"GNU Octave is a high-level language, primarily intended for numerical computations." |
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"Populus is a software contains a set of simulations to teach population biology and evolutionary ecology." |
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"Python is a remarkably powerful dynamic programming language that is used in a wide variety of application domains." |
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"R is a language and environment for statistical computing and graphics." |
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"Sage is a free open-source mathematics software system." |
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"Scilab is an open source software for numerical computation." |
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"SciPy is open-source software for mathematics, science, and engineering." |
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"Structure is a free software package for using multi-locus genotype data to investigate population structure." |
Visualization and Presentation
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"Datavisualization provides a collection of various data visualization tools." |
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"Gnuplot is a super useful tool for plotting scientific results." |
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"Latextemplates provides a collection of free stylish LaTeX templates." |
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"Prezi is a zooming presentation editor." |
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"Wordle is a toy for generating "word clouds" from text that you provide." |
